VMD-L Mailing List

From: Aaron.Oakley_at_csiro.au
Date: Sun Jan 18 2009 - 19:24:36 CST

I would suggest creating your novel N- and C-terminal modifications as patches and applying
them explicitly. This is how you would e.g. N-acetylate the N-terminus using patch ACE.

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From: owner-vmd-l_at_ks.uiuc.edu [mailto:owner-vmd-l_at_ks.uiuc.edu] On Behalf Of Jianping Lin
Sent: Monday, 19 January 2009 8:46 AM
To: vmd-l_at_ks.uiuc.edu
Subject: vmd-l: How to get rid of default patch for NTER and CTER

Dear All,

I want to use my own defined c-terminus and N-terminus for a protein while generating the psf file. How can I get rid of default patch for NTER and CTER in psfgen? It seems that simply adding ( first NONE and last NONE) line doesn't work.

Thanks a lot.

Jianping