VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Jan 27 2009 - 08:44:32 CST

Hi,
  You can very easily write scripts in VMD which create an atom
selection and write out the frames of interest as PDB files.
If you search through the VMD tutorials and mailing list, you
will find many example scripts, and you will begin to see how
these kinds of things are done.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Jan 27, 2009 at 01:58:23PM +0000, Andres Morales N wrote:
>
> Hi!
>
> I know how to get a PDB file from DCD file, but only one each time.
> Does anybody know how to get all PBD files (1000 frames) from DCD file at once?
> Sorry, if it is a dummy question.
> _________________________________________________________________
> News, entertainment and everything you care about at Live.com. Get it now!
> http://www.live.com/getstarted.aspx 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078