VMD-L Mailing List

From: Víctor (victor.gil.sepulveda_at_gmail.com)
Date: Sun Jun 14 2009 - 15:35:55 CDT

Dear all,

I have a self made protein structure with very bad positioned residues and
then the structure is about to be disconected in some parts. I've noted that
when i get the psf file with autopsf the on on screen structure seems to be
fixed, but the pdb file is still the same so i think that the psf file is
containing some kind of patches to fix the structure...Can I combine this
psf and pdb to get a pdb file with the fixed structure??

Or maybe you know another method for fixing structures?

Thanks in advance, 

-- 
Víctor Gil Sepúlveda
E. Informatica - FIB - UPC