From: Edward P. Manning (
Date: Sun Jul 26 2009 - 19:08:28 CDT

I'd like to view and manipulate two separate structures with VMD and find
out each of their coordinates in .pdb format when I'm done arranging them
how I'd like. Is that possible with VMD?
If not, does anyone know any convenient way of doing this other than
performing transformations outside of VMD followed by visualizing them?