VMD-L Mailing List
From: daniel aguayo (bioquimico_at_gmail.com)
Date: Tue Aug 11 2009 - 13:16:04 CDT
- Next message: pxq ÅÓÑ©ÇÛ: "can we control the number and distribution of solvate molecular"
- Previous message: Benjamin Bouvier: "Re: namd-l: how to write a command to close vmd in shell script?"
- In reply to: John Stone: "Re: Cionize on mac cuda"
- Next in thread: John Stone: "Re: Cionize on mac cuda"
- Reply: John Stone: "Re: Cionize on mac cuda"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Tks a lot John
:P
My bests
Daniel
On Thu, Aug 6, 2009 at 3:48 PM, John Stone<johns_at_ks.uiuc.edu> wrote:
>
> Hi,
> I've posted a MacOS X binary of cionize for you here:
> http://www.ks.uiuc.edu/Research/vmd/alpha/cionize/
>
> To run it, gunzip it, then see the README file that I put
> in that directory as well. Let me know if you need help
> using it or if you run into any problems.
>
> I should mention that VMD is beginning to incorporate the
> computation routines used by cionize, and we'll probably completely
> replace cionize with VMD scripts in the next 6 months or so.
> All that remains is to write new VMD routines to do the electrostatic
> map "update" steps that cionize does after placing each ion. Once
> that's in place, you'll be able to write a short VMD script that does
> everything that cionize does.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Wed, Aug 05, 2009 at 09:46:10PM -0400, daniel aguayo wrote:
>> Tks John, I'll be waiting for it.
>> Cheers
>> DAV
>>
>> On Wed, Aug 5, 2009 at 9:43 PM, John Stone<johns_at_ks.uiuc.edu> wrote:
>> >
>> > Hi,
>> > I will be compiling updated versions of catdcd and cionize based
>> > on the latest VMD plugins. I should be able to provide CUDA-enabled
>> > Mac builds of cionize shortly.
>> >
>> > Cheers,
>> > John Stone
>> > vmd_at_ks.uiuc.edu
>> >
>> > On Wed, Aug 05, 2009 at 09:29:07PM -0400, daniel aguayo wrote:
>> >> I want to use de cionize plugin on vmd 1.8.7, but I can't find de
>> >> cionize executable?
>> >> I tried to compile it from the source version on my mac leopard, but I can't.
>> >> Anyone can help me.
>> >>
>> >> Tks a lot
>> >>
>> >> Daniel Aguayo V.
>> >> Centro de Bionformatica y Simulacion Molecular
>> >> Universidad de Talca
>> >> Chile
>> >>
>> >> --
>> >> saludos desde el fin del mundo
>> >
>> > --
>> > NIH Resource for Macromolecular Modeling and Bioinformatics
>> > Beckman Institute for Advanced Science and Technology
>> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
>> > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
>> > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>> >
>>
>>
>>
>> --
>> saludos desde el fin del mundo
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
>
-- saludos desde el fin del mundo
- Next message: pxq ÅÓÑ©ÇÛ: "can we control the number and distribution of solvate molecular"
- Previous message: Benjamin Bouvier: "Re: namd-l: how to write a command to close vmd in shell script?"
- In reply to: John Stone: "Re: Cionize on mac cuda"
- Next in thread: John Stone: "Re: Cionize on mac cuda"
- Reply: John Stone: "Re: Cionize on mac cuda"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]