VMD-L Mailing List

From: BAN,YOUNG MIN (half0min_at_ufl.edu)
Date: Wed Sep 02 2009 - 16:52:23 CDT

Hello.

I am trying to represent DPPC lipids as bonds or lines. But since
I am using Marrink's coarse grained model, it seems that vmd does
not recognize bonding between coarse grained molecules. I am using
Gromacs, so I have .gro, .itp, and .top files.

How can the lipids be represented by bonds or lines using those
.gro, .itp, or .top files? Do I need other type of files to do
this?

Thanks in advance.

Young-Min Ban