VMD-L Mailing List

From: aneesh cna (aneeshcna_at_gmail.com)
Date: Wed Feb 24 2010 - 01:04:27 CST

Dear VMD users,
                     My simulation system is a well equilibrated cubic box
of organic molecules. Now I want to put the protein inside this solvent
box. For this first I tried to make a hole in the center of the box using
the command ' all and (not within 30 of resid 1) ' ( residue 1 is almost in
the center of the box) and and it worked fine. Then I load protein molecule
and tried move it towards the the hole ( just by using mouse and looking at
OpenGL display), but I cant able to make it out successfully. Is there any
other way to approach this problem?. Waiting for your valuable reply

Thanks in Advance

Sincerely
Aneesh