VMD-L Mailing List

From: hirdesh kumar (hirdeshs8_at_gmail.com)
Date: Fri Aug 20 2010 - 13:30:42 CDT

Thanks.. The link is really useful.

On Fri, Aug 20, 2010 at 11:16 PM, Nicholas Musolino <musolino_at_mit.edu>wrote:

> Hello Hirdesh,
>
> Have you seen the VMD tutorial?
> http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/index.html
>
> And in particular the "Data ANnalysis" section?
> http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/node7.html
>
> If you read through the "Example of an analysis script," you should be able
> to change the relevant part to calculate RMSF.
>
> Hope this helps!
>
> Nicholas Musolino
>
>
> On Aug 20, 2010, at 12:22 PM, hirdesh kumar wrote:
>
> > Hi All,
> > I have the AMBER files in .crd and .parm7 format and I am looking forward
> to calculate the rms fluctuation residue wise during the entire run.. Please
> tell me how can I calculate the rmsf using VMD1.8.7 version.
> >
> > Thanks in advance,
> > Hirdesh
>
>
>
> ---------------------------------------------------------------------------
> Nicholas Musolino
> Ph.D. candidate, Department of Chemical Engineering, MIT
> musolino_at_mit.edu | 617-253-6675 | Room E19-528
>
>
>
>
>
>