From: Axel Kohlmeyer (
Date: Thu Dec 09 2010 - 05:27:57 CST

On Thu, Dec 9, 2010 at 4:36 AM, Joyce Tan <> wrote:
> Hi,
> I was trying to plot the potential energy of my protein system across the
> simulation time. NAMD plot and NAMD Energy don't seem to be capable of doing
> this. Can anyone show me the alternative to plot those potential energy

namdplot should be able to do what you ask for.


> reading in the log file?
> Thanks.
> Regards,
> Joyce

Dr. Axel Kohlmeyer
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.