From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Thu Dec 09 2010 - 05:27:57 CST

On Thu, Dec 9, 2010 at 4:36 AM, Joyce Tan <joyce.tankh_at_gmail.com> wrote:
> Hi,
>
> I was trying to plot the potential energy of my protein system across the
> simulation time. NAMD plot and NAMD Energy don't seem to be capable of doing
> this. Can anyone show me the alternative to plot those potential energy

namdplot should be able to do what you ask for.

axel.

> reading in the log file?
>
> Thanks.
>
> Regards,
> Joyce
>

-- 
Dr. Axel Kohlmeyer
akohlmey_at_gmail.com  http://goo.gl/1wk0
Institute for Computational Molecular Science
Temple University, Philadelphia PA, USA.