VMD-L Mailing List

From: matziast_at_med.uth.gr
Date: Tue Dec 14 2010 - 03:26:17 CST

Hi,
I try to measure the the constants of the bond lengths. The command is the
following: measure energy bond {5 6} k or measure bond {5 6} k?
I read the user guide but I am confused.
If anyone knows, I would be thankful if he could tell me about these commands.
On top of that, in order to find the multiplicity of a dihedral do I have to pay
attention to the order of the atoms eg. the chiral center must be first?
Thank you in advance.
Maria