VMD-L Mailing List

From: Ramya Narasimhan (varsharamya_at_gmail.com)
Date: Fri Dec 31 2010 - 04:11:06 CST

I tried to convert the dcd file to pdb after loading in VMD. When I loaded
the psf and dcd files, the peptide structure is fine. But after saving the
coordinates, some of the bonds are missing and some additional bonds are
seen in the newly written pdb files. How to get rid of this error?

Thanks in advance for any comments/suggestions. 

-- 
Ramya.L.