VMD-L Mailing List
From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Mon Mar 28 2011 - 08:08:32 CDT
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Hi,
You can try using this script
https://github.com/ajasja/calculate_dihedrals
<https://github.com/ajasja/calculate_dihedrals>It calculates all the
dihedral angles for the trajectory and writes it to a file. Then you can
plot this using gnuplot/mathematica/octave.../
Best regards,
Ajasja
On Mon, Mar 28, 2011 at 12:29, Ramya Narasimhan <varsharamya_at_gmail.com>wrote:
> I want to draw Ramachandran plot for the trajectory. I tried in vmd, but I
> got points for one residue in all frames at a time. Is it possible to have
> all residues for all the frames at once? I want to have the plot with the
> angles (label) on the axis.
> Thanks in advance for any help.
>
> --
> Ramya.L.
>
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