From: Saketh Bharadwaja (
Date: Fri Apr 01 2011 - 11:07:21 CDT


Please find attached my VMD input file spit out by LAMMPS. I have a total of
801 atoms with the first 400 fixed and the rest 401 moving. I want bonds to
be created among the atoms to understand the lattice structure better and
run the movie. Could somebody please tell me how bonds are created
automatically. I tried creating bonds manually selecting the bonds under
mouse tab in the VMD console but I want them to be done automatically.