From: Asmaa Elsheshiny (
Date: Tue May 10 2011 - 12:14:08 CDT

Dear all,
I tried to use apbs 1.2.1 version with vmd 1.8.7. It sounds working but no output has appeared in the working directory, and the most important thing is the program was still working even when i use smaller peptide to test it. so, what do suggest?
Note, nothing wrong in the PQR file I have generated it by pdb2pqr web server. and I have used the online tutorial provided by apbs to be used by vmd for the electrostatic potential visualization step by step.