VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu May 12 2011 - 15:58:12 CDT

Hi,
  No, as you can see, the makefile for catdcd is also using the same
variables:
     ${CXX} ${CXXFLAGS} ${CATDCDOBJS} -o ${ARCHDIR}/catdcd -L${COMPILEDIR}/lib_${ARCH}/molfile -lmolfile_plugin ${TCLLIB} ${TCLLDFLAGS} ${NETCDFLIB} ${NETCDFLDFLAGS} -lm

Did you make sure to remove the definition of NETCDFLDFLAGS from
your Make-arch file?

Cheers,
  John

On Thu, May 12, 2011 at 09:12:32PM +0100, Cosseddu, Salvatore wrote:
> Sorry, is it possible that there's a small bug in some vmd 1.9 plugin
> Makefiles?
>
> According to
> http://www.ks.uiuc.edu/Research/vmd/plugins/doxygen/compiling.html and to
> the general Makefile, if NETCDFLIB and NETCDFINC are not declared, vmd
> could be compiled without netcdf. But catdcd requires the library to be
> linked to compile as you can see from this error. The compilation aborts.
>
> #$ make LINUXAMD64 TCLINC=$TCLINC TCLLIB=$TCLLIB
> > src/sgsmooth.C: In function `float_vect lsqr_fprime(const float_vect&,
> int)':
> > src/sgsmooth.C:545: warning: comparison between signed and unsigned
> integer expressions
> > src/sgsmooth.C: In function `float_vect sg_derivative(const float_vect&,
> int, int, double)':
> > src/sgsmooth.C:567: warning: comparison between signed and unsigned
> integer expressions
> > src/sgsmooth.C:600: warning: comparison between signed and unsigned
> integer expressions
> > /usr/bin/ld: cannot find -lnetcdf
> > collect2: ld returned 1 exit status
> > make[2]: *** [../compile/lib_LINUXAMD64/bin/catdcd4.0/catdcd] Errore 1
> > make[1]: *** [bins] Errore 1
> > make: *** [LINUXAMD64] Errore 2
>
> Best regards
> Salvatore Cosseddu
>
> Salvatore Cosseddu
> Centre for Scientific Computing and
> School of Engineering
> University of Warwick
> Coventry CV4 7AL
> United Kingdom
>
> email: S.M.Cosseddu_at_warwick.ac.uk
>
> Ps. I'm sorry if it is a repost but I received a failure notice. 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/       Fax: 217-244-6078