From: Joseph Bylund (joseph.bylund_at_gmail.com)
Date: Thu May 19 2011 - 11:31:52 CDT

The stamp structural alignment in extensions->analysis->multiseq sounds
like what you're looking for.

On 05/19/2011 11:43 AM, ban arn wrote:
> Dear VMD users
>
> Is it possible to align two proteins of varying atom numbers according
> to backbone in vmd.
>
> Kindly advice
>
> Many Thanks
> Balaji
>