From: John Stone (
Date: Mon Jul 18 2011 - 09:57:59 CDT

  This should be well described in the VMD tutorial. If you haven't
gone through the VMD tutorial yet, then now would be a good time,
as you will learn how to do this, along with many other useful things.

  John Stone

On Mon, Jul 18, 2011 at 04:31:04AM -0700, hamze rahimi wrote:
> Dear expert
> i want to calculate distance between tom atoms that located on two chains
> of protein, chain A and B. In your opinion VMD could help me or you have
> other suggestion.
> --
> Yours sincerely
> Rahimi Hamzeh
> PhD student in Medical Biotechnology
> Pasteur institute
> Tel: +989125975321
> E-mail:

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