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From: Filip Persson (filip.persson_at_gmail.com)
Date: Tue Sep 06 2011 - 03:08:20 CDT
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Hello,
I am trying to define a cavity in a protein using the atom selection command
in VMD. I tried using
*water and within 3 of (residue X and residue Y)*
in the 'selected atoms-field' in the graphical representations window, but
nothing happens. Changing the distance does not help, so obviously I must be
doing something wrong here. Is it possible to define cavities in a way
similar to the command above, or should I use any other type of selection
command?
Thanks!
Best,
Filip
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- Reply: Axel Kohlmeyer: "Re: define water cavity using atom selection in graphical representations window"
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