VMD-L Mailing List

From: kirtana S (skirtana4_at_gmail.com)
Date: Wed Sep 07 2011 - 13:47:51 CDT

I got to run this , Thanks for the help

Got the following output in the first step Can anyone tell me what is the
represented by the last line of output ,even after going through the source
script I was not able to know .

>Main< (analysis) 10 % set I [draw principalaxes $sel]

Calculating principal axes.

Getting the center-of-mass...

Total weight: 6089.268099308014

Computing the inertia tensor...

Drawing the principal components...

Total weight: 6089.268099308014

cone {8.353901382364949 -19.042638288464808 -11.13951700103838}
{10.4423619010916 -23.80323236472087 -13.924401729862122} radius 1.474375

cone {18.460952976832058 12.55524931241439 -7.618550197874142}
{23.076176394175487 15.694127136378127 -9.523193225906827} radius 1.474375

cone {12.078835218766475 -6.019825153431377 19.348306895796757}
{15.098529196593507 -7.5247159459290796 24.185378141181797} radius 1.474375

{0.3541264126709032 -0.8072223952956442 -0.47221445168694265}
{0.7825728558445831 0.5322387153817275 -0.32295769869142604}
{0.5120295002674071 -0.25517436074568944 0.8201901221509184}

 Thanks

On Wed, Sep 7, 2011 at 12:31 AM, Axel Kohlmeyer <akohlmey_at_gmail.com> wrote:

>
>
>
>
> On Sep 7, 2011, at 12:04 AM, kirtana S <skirtana4_at_gmail.com> wrote:
>
> I am trying to use alignment to principal axes in VMD
> I added these lines to my vmd file which was generated after compiling
> VMD 1.9 , when I do package require orient
>
>
> Isn't that supposed to be:
>
> package require Orient
>
>
>
>
> can't find package orient
>
>
> lappend auto_path /home/kl4/downloads/la1.0
> lappend auto_path /home/kl4/downloads/orient
>
> I was not able to locate .vmdrc file please suggest .
>
>
> You need to do: ls -a
> To list it. There won't be one in your home directory until you put it
> there. Details are in the VMD users guide.
>
> Axel
>
>
>
> Thanks
>
>