VMD-L Mailing List

From: James Starlight (jmsstarlight_at_gmail.com)
Date: Sat Oct 29 2011 - 07:29:33 CDT

Dear VMD users!

I have some question about processing of my starting structure for further
MD simulation.

I'd like to prepare my initial structure in VMD but run si,ulation via other
package.
I wounder to know

1)is it possible to add CAP groups like ACE or NH2 on the C and N- term
ressidues?

2) to orient ( align) my protein along chozen axis.?

Thank you for your help

James