VMD-L Mailing List

From: Ricardo Soares (rsoares_at_fcfrp.usp.br)
Date: Tue Nov 29 2011 - 05:47:33 CST

Dear VMD users,

I'd like to save an specific selection as coordinates in a PDB file, so I can
make an GROMACS index file out of it. For this, I need that VMD maintains the
original atom numbering, so I can identify the selected atoms. "Writepdb"
always reissues a new numbering, starting from 1, which scrambles everything.

Any ideas or known scripts?

Thanks in advance,