VMD-L Mailing List

From: thereal sisterdot (therealsisterdot_at_gmail.com)
Date: Mon Jan 30 2012 - 05:27:33 CST

Dear all,

i am having trouble seeing structures with the styles NewRibbons
NewCartoon, while Ribbons and Cartoon seem to work.

e.g. for
http://www.rcsb.org/pdb/files/3QBF.pdb.gz

> mol new 3QBF.pdb
> vmd_calculate_structure 0
> [atomselect top "name CA"] get structure
C E E C T T T T T E E E E E E T T E E E E E E E T T T T C C E E E C C C C C
C C C C E E E E E E E E T T E E E E E E E E E E E E E E E E T T E E E E E E
E E E T T T T T T T E E E C H H H H G G G C C E E E T T T B C T T T T T E E
E E E E T T E E E E E E E T T T T C C C E E C C C C C C C C E E E E E E E E
E T T E E E E E E E E E E E E E E E E T T T E E E E E E E E E T T T T T T E
E E C H H H H H H H H C C E E E C
> mol modstyle 0 0 cartoon
(works okay)
> mol modstyle 0 0 newcartoon
(shows almost nothing- although some specks here and there seem visible)

is it cause i am missing CUDA?

thanks a lot
Maria