VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Mar 01 2012 - 10:06:21 CST
- Next message: siladitya mukherjee: "Calculating RDF from xyz file"
- Previous message: Chris Harrison: "Re: how to place a membrane protein with OPM ?"
- In reply to: Aaron Oakley: "measure sasa"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Aaron,
The -samples option just changes the number of samples used to
approximate the surface area. The default sample count is 500 per atom,
you can increase it to improve the accuracty somewhat.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Thu, Mar 01, 2012 at 10:50:08AM +1100, Aaron Oakley wrote:
> Hi All,
>
> with regard to the measure sasa command:
>
> sasa srad selection [-points varname] [-restrict restrictedsel] [-samples numsamples]
>
> The -samples option is not described in the manual. I gather this affects the number of points
> that are generated, but in what way?
>
>
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
- Next message: siladitya mukherjee: "Calculating RDF from xyz file"
- Previous message: Chris Harrison: "Re: how to place a membrane protein with OPM ?"
- In reply to: Aaron Oakley: "measure sasa"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]