VMD-L Mailing List

From: George Tzotzos (gtzotzos_at_me.com)
Date: Sun Mar 18 2012 - 06:47:36 CDT

I'm a novice to VMD and would be most grateful for any guidance.

I'm trying to work out the parts of a structure that shows the greatest rms deviation during a trajectory as compared to the crystallographic structure. I couldn't see how this could be done by means of the RMSD trajectory tool. Probably it cannot.

Is there a script available that can handle this? Or an alternative plug in?

Thank you in advance for any help

George