From: Ajith Rathnaweera Rajapaksha Mudalige (
Date: Mon Apr 16 2012 - 18:54:32 CDT


I am Ajith a Physics Graduate Student at Purdue University.

I am working on a simulation where at each time step I need to apply a force on every surface atom, in a direction perpendicular to the solvent accessible surface.

I noticed, the features of "measure sasa" is providing all the details I want, but can I use "measure sasa" in NAMD simulations?

I highly appreciate your input in this matter. Please let me know what choices I have in here.