VMD-L Mailing List

From: Q=A3ukasz_Pi=EAko=B6=22?= (piekos_at_chemia.uj.edu.pl)
Date: Mon Apr 23 2012 - 17:21:42 CDT

Dear VMD users,

As far as I know VMD does not include H-H bonds in DynamicBonds drawing
method.
Is there any possibility to circumvent this situation?
I have MD trajectory, which includes numerous transitions involving H-H
bonds forming and breaking. In this situation adding and removing H-H
bonds manually does not solve my problem.

Best regards
Lukasz Piekos