From: Axel Kohlmeyer (
Date: Tue May 01 2012 - 07:34:55 CDT

On Tue, May 1, 2012 at 1:48 AM, fariba taghavi
<> wrote:
> Dear VMD users,
> I want to calculate the overall density of an atom in the specific 3D part
> of my simulation box. (for example the oxygen density inside a nanotube in
> the simulation box)
> Would you please tell me how can I do this using "volmap" or something else?

have you tried experimenting with it?
what you ask for is very specific and thus
it is unlikely that somebody will be doing
your job for you.


> Your help is greatly appreciated.
> Thanks
> Fariba Taghavi

Dr. Axel Kohlmeyer
College of Science and Technology
Temple University, Philadelphia PA, USA.