VMD-L Mailing List

From: Monika Madhavi (monikamadhavi_at_gmail.com)
Date: Fri Aug 10 2012 - 01:04:08 CDT

Dear all,

I created a graphene sheet with Nanotube Builder and created psf and pdb by
typing

"animate write psf graphene.psf"
"animate write pdb graphene.pdb"

psf and pdb files were successfully created and then I wanted to merge it
with a peptide which I created using Peptide Builder using Mergestructure
plugin.
Then I got an error message saying

"MOLECULE DESTROYED BY FATAL ERROR" and the exciting psf is in charmm
format but it need x-plor format.

Then I tried to write psf using the command

"animate write psf x-plor graphene.psf" as given in the psfgen user
guide,But then I got a psf file named x-plor.

How can I convert my charmm psf to x-plor in vmd.

Thanks

Monika