VMD-L Mailing List
From: Sean T Kigerl (skigerl_at_ucsd.edu)
Date: Tue Aug 14 2012 - 00:43:26 CDT
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Hello all,
I used the inorganic builder plugin to create a silicon nitride nanopore
(for which I now have pdb and psf files). I also used the molefacture
plugin to build a benzene ring attached to a nitrogen atom (for which I
now have pdb, psf, topology and parameter files). My question is how would
I create a pdb/psf with the nitrogen (from the benzene ring) attached to
one of the silicon atoms in the inside of the nanopore? (Essentially
functionalizing the nanopore with a benzene ring) Any suggestions would be
greatly appreciated!
Sean Kigerl
- Next message: Passerone, Daniele: "VMD 1.9.1 on Macosx Snow Leopard: items greyed out"
- Previous message: Francesco Pietra: "Re: Failure getting correct charge on the system"
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- Reply: Monika Madhavi: "Re: creating a modified pdb/psf file"
- Reply: Axel Kohlmeyer: "Re: creating a modified pdb/psf file"
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