From: Ajasja Ljubetič (
Date: Tue Sep 11 2012 - 04:54:37 CDT

For what is worth, I think VMD (and NAMD) have the best documentation of
all the MD packages I've tried.

Which parts of the documentation are you referring to (please be more
precise)? Also, have you seen this and this


On 11 September 2012 10:53, BIO MED <> wrote:

> hello!
> I havent find a good VMD tutorial. I cant find anywhere, examples to do
> these actions:
> select specific atoms (based on various criteria, like specifically
> hydrogen atoms, hydrophile atoms or subunits of the molecule, etc)
> the documentation is not clear, not complete and has few if any, examples
> can you fix that?
> can you help me with my specific request?
> thanks!