VMD-L Mailing List

From: James Conway (jxc100_at_pitt.edu)
Date: Thu Dec 06 2012 - 12:35:11 CST

Launching VMD-CUDA 1.9.1 by double-clicking on the VMD icon gets a bus error at address 0x00000800. Crash report below.
MacBook Pro 9.1, OSX 10.8.2, NVIDIA GeForce GT 650M (forced with gfxCardStatus), CUDA driver 5.0.37 (latest).

VMD 1.9.1 without CUDA runs fine.

Any suggestions or comments welcome.

James Conway
----------------------------------------------------------------------
James Conway, PhD.,
Department of Structural Biology
University of Pittsburgh School of Medicine
Biomedical Science Tower 3, Room 2047
3501 5th Ave
Pittsburgh, PA 15260
U.S.A.
Phone: +1-412-383-9847
Fax: +1-412-648-8998
Email: jxc100_at_pitt.edu
Web: http://www.structbio.pitt.edu/main/people/faculty/71-conway
----------------------------------------------------------------------

Process: vmd_MACOSXX86 [28561]
Path: /Applications/VMD 1.9.1.app/Contents/MacOS/../Resources/VMD.app/Contents/MacOS/VMD
Identifier: vmd_MACOSXX86
Version: 0.0.1d1
Code Type: X86 (Native)
Parent Process: sh [28559]
User ID: 505

Date/Time: 2012-12-06 09:05:54.795 -0500
OS Version: Mac OS X 10.8.2 (12C3006)
Report Version: 10

Interval Since Last Report: 388575 sec
Crashes Since Last Report: 7
Per-App Crashes Since Last Report: 3
Anonymous UUID: 8F9E5FBF-65B4-99D3-2A9F-EB3A38F9C1BB

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000800

VM Regions Near 0x800:
--> __PAGEZERO 0000000000000000-0000000000001000 [ 4K] ---/--- SM=NUL /Applications/VMD 1.9.1.app/Contents/vmd/vmd_MACOSXX86
    __TEXT 0000000000001000-0000000000542000 [ 5380K] r-x/rwx SM=COW /Applications/VMD 1.9.1.app/Contents/vmd/vmd_MACOSXX86

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_c.dylib 0x936be7b0 strncpy + 160
1 ??? 0x00000800 0 + 2048

Thread 1:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x906e79ae kevent + 10
1 libdispatch.dylib 0x99063c71 _dispatch_mgr_invoke + 993
2 libdispatch.dylib 0x990637a9 _dispatch_mgr_thread + 53

Thread 2:
0 libsystem_kernel.dylib 0x906e70ee __workq_kernreturn + 10
1 libsystem_c.dylib 0x936d504c _pthread_workq_return + 45
2 libsystem_c.dylib 0x936d4e19 _pthread_wqthread + 448
3 libsystem_c.dylib 0x936bccca start_wqthread + 30

Thread 3:
0 libsystem_kernel.dylib 0x906e70ee __workq_kernreturn + 10
1 libsystem_c.dylib 0x936d504c _pthread_workq_return + 45
2 libsystem_c.dylib 0x936d4e19 _pthread_wqthread + 448
3 libsystem_c.dylib 0x936bccca start_wqthread + 30

Thread 0 crashed with X86 Thread State (32-bit):
  eax: 0x00008000 ebx: 0x0003299f ecx: 0x0000fff1 edx: 0x0000000f
  edi: 0x00000800 esi: 0xbfffeaec ebp: 0xbfffeca8 esp: 0xbfffeab4
   ss: 0x00000023 efl: 0x00010202 eip: 0x936be7b0 cs: 0x0000001b
   ds: 0x00000023 es: 0x00000023 fs: 0x00000000 gs: 0x0000000f
  cr2: 0x00000800
Logical CPU: 2

Binary Images:
    0x1000 - 0x541fe2 +VMD (???) <465C6620-BF01-12B3-249E-E3AD57D5FF25> /Applications/VMD 1.9.1.app/Contents/vmd/vmd_MACOSXX86
  0x644000 - 0x6b1ff3 +libcudart.dylib (5) <EB5BB98D-A926-B355-BD92-594C41EFD9A4> /Developer/NVIDIA/CUDA-5.0/lib/libcudart.dylib
  0x6b8000 - 0x6b9ff7 +libtlshook.dylib (5) <FB6236E9-EB92-8540-BE84-50A93234F7D4> /Developer/NVIDIA/CUDA-5.0/lib/libtlshook.dylib
 0x117a000 - 0x117bff7 +libcuda.dylib (5.0.37) <93061260-5979-A9ED-A4DF-A13CC8A988AC> /usr/local/cuda/lib/libcuda.dylib
...