From: Axel Kohlmeyer (
Date: Wed Dec 19 2012 - 03:52:49 CST

On Wed, Dec 19, 2012 at 10:01 AM, Ignacio Fernández Galván
<> wrote:
> Hi all,
> Is there any (simple) way of reading a Gromacs index (.ndx) file in VMD?


> An index file simply contains a list of index numbers (1-based) for several custom selections, so it would be pretty simple to convert them to VMD syntax.
> Ignacio

Dr. Axel Kohlmeyer
International Centre for Theoretical Physics, Trieste. Italy.