VMD-L Mailing List
From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Wed Apr 10 2013 - 03:35:46 CDT
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On Wed, Apr 10, 2013 at 7:54 AM, Kristine Manibog <kmanibog_at_iastate.edu> wrote:
> Hi, I am trying to determine the angle between two domains of a protein. Is
> there any way I could measure the principal or long axis of a domain or
> protein, or can I directly compute the angle between these two domains in
> VMD?
you could use "measure inertia" and then compute the angle between the
two principal axes.
axel.
>
> Thank you.
>
> --
> Kristine Manibog
> PhD Student
-- Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0 International Centre for Theoretical Physics, Trieste. Italy.
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