From: Axel Kohlmeyer (
Date: Mon Jun 10 2013 - 23:55:51 CDT

On Tue, Jun 11, 2013 at 5:34 AM, yp sun <> wrote:
> Dir VMD users,
> I want to do SMD on a protein which have three chains. I wish to set the
> three C-terminal atoms as fixed atoms and the three N-terminal atoms as smd
> atoms, and pull the smd atoms in directions from the C-terminal to
> N-terminal of each chain seperately. Do I have to do the SMD procedure three
> times, each time for a single chain? I wish to pull the three smd atoms
> simultaneously but don't know how to do this. Could you give me the answers?

unlikely. this is the vmd-l mailing list, where people discuss issues
about the VMD visualization and analysis software.


> Yeping Sun
> CAS Key Laboratory of Pathogenic Microbiology & Immunology
> NO.1 Beichen West Road,Chaoyang District,Beijing 100101,china

Dr. Axel Kohlmeyer
International Centre for Theoretical Physics, Trieste. Italy.