VMD-L Mailing List
From: flavio seixas (oivalf_nix_at_yahoo.com)
Date: Tue Jun 18 2013 - 17:58:17 CDT
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It seems you are not using topology files for the ligands PYP and 3DR
Try to generate them and include they in the psf generator script.
Regards,
-------------------------------------
Flavio Augusto Vicente Seixas
Laboratory of Structural Biochemistry
Department of Biochemistry
Universidade Estadual de Maringá, PR, Brazil
http://www.uem.br
________________________________
From: Nathan Li <nathan.li17_at_gmail.com>
To: vmd-l_at_ks.uiuc.edu
Sent: Tuesday, June 18, 2013 2:53 PM
Subject: vmd-l: PSF not generating
Hi all,
I'm fairly new to VMD and just finished the tutorial. I'm trying to generate a PSF file for the following file, but it's not recognizing some of the bonds and atoms.
http://www.rcsb.org/pdb/explore/explore.do?structureId=1FZL
Any help would be greatly appreciated.
Thanks!
- Next message: Wenhao Liu: "Basic question about improper"
- Previous message: Bennion, Brian: "RE: fftk Opt. Charges"
- In reply to: Nathan Li: "PSF not generating"
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