From: Axel Kohlmeyer (
Date: Sat Aug 31 2013 - 09:00:12 CDT

On Sat, Aug 31, 2013 at 2:42 PM, Marzieh Dehghan <> wrote:
> Hi every body,
> I am using VMD 1.9 and I have a problem. after protein-protein docking, I
> want to calculate NAMD energy with VMD, but it needs to make .psf file. I
> would like to know how can I make this file?

you better start by reading the NAMD documentation and going over the
tutorials. without sufficient knowledge of how NAMD works, you are
likely to make mistakes and and get incorrect results. that will
automatically teach you how to correctly generate .psf files.


> I really appreciate if any one help me
> Best Regards,
> Dehghan

Dr. Axel Kohlmeyer
International Centre for Theoretical Physics, Trieste. Italy.