VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Wed Jul 02 2014 - 07:03:26 CDT

Have you tried mergemols
<https://sites.google.com/site/akohlmey/software/topotools/topotools---documentation#TOC-mergemols-list-of-molecule-ids->
?
Regards,
Ajasja

On 2 July 2014 11:15, Adam Kells <adam.kells_at_ucdconnect.ie> wrote:

> Hi, I'm starting to work on running simulations of interactions between
> proteins and CNTs. I generated my CNT using the make_arm.tcl code from
> the "Simulation of Water Permeation Through Nanotubes" tutorial. I then
> downloaded my protein from the PDB. I tried loading them both into vmd
> and then writing them to one file but when I do that some of my carbon
> atoms have their coordinates set to {0 0 0}. Is there a good way of doing
> this?
> Regards,
> Adam
>