VMD-L Mailing List

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Tue Oct 28 2014 - 11:54:41 CDT

Hi,

Perhaps the easiest way is to rightclick on the molecule
<http://snag.gy/V8Dpb.jpg>, click "save coordinates" and under selection
write "not water".
Or using TCL scripting create a not water selection and use the writepsf
and writepdb methods.
It's all extremely well documented.

Best regards,
Ajasja

On 28 October 2014 17:19, Asis Jana <jana.asis_at_gmail.com> wrote:

> Dear VMD experts,
>
> I have a solvated box with a cylindrical nanotube. I wish to remove waters
> from inside the tube.Can you suggest to me how to do this?
>
> Thank you.
>
> Asis
>