VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Mon Feb 09 2015 - 13:07:10 CST

On Mon, Feb 9, 2015 at 1:43 PM, Ben Hanson <ben19q_at_hotmail.com> wrote:
> The vmd version is 1.9.2 and I am unsure how to check the topotools version.

package require topotools

it will return the version number of the topotools plugin. however, if
you have VMD 1.9.2, you also have the latest plugin.

> I have attached the simple data file.

thanks. there has to be something about it that is different from
others and thus makes it trigger the bug you are reporting.

hopefully i can get back to you soon with a bugfix.

more later,
     axel.

>
> Thanks
> Ben
>
>
>> Date: Mon, 9 Feb 2015 13:37:07 -0500
>> Subject: Re: vmd-l: topo guessatom
>> From: akohlmey_at_gmail.com
>> To: ben19q_at_hotmail.com
>> CC: vmd-l_at_ks.uiuc.edu
>
>>
>> On Mon, Feb 9, 2015 at 1:03 PM, Ben Hanson <ben19q_at_hotmail.com> wrote:
>> > I have imported a lammps data file using topotools, but when I attempt
>> > to
>> > change types to elements using the command
>> >
>> > topo guessatom lammps data
>> >
>> > I get the error "can't read "idx": no such variable", with previous
>> > versions
>> > I have not had this issue. Any help would be greatly appreciated
>>
>> which version of topotools? which version of VMD? are both the latest?
>>
>> if both are the latest, can you provide a (simple) test file to
>> reproduce the issue?
>>
>> axel.
>>
>> >
>> > Ben Hanson
>>
>>
>>
>> --
>> Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
>> College of Science & Technology, Temple University, Philadelphia PA, USA
>> International Centre for Theoretical Physics, Trieste. Italy. 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.