VMD-L Mailing List

From: Monika Madhavi (monikamadhavi_at_gmail.com)
Date: Mon Feb 23 2015 - 20:46:52 CST

Dear all,

I have a simulation box of size 60x60x60 Angstroms and I want to divide the
box into smaller boxes and access all the atoms in a smaller box at a time.
Can I do it using this command?

lets say the coordinates of my smaller box are {-3 < x < 1} {-2 <y <2} {-1
<z<3}

atomselect top "x < -3 and x <1 and y>-2 and y<2 and z>-1 and z<3"

if not can you suggest how can I do that?

Thank you.
regards,
Monika 

-- 
W.A.Monika Madhavi
Lecturer (Probation),
Department of Physics,
University of Colombo.