From: Tristan Croll (
Date: Tue Dec 08 2015 - 00:59:06 CST

Look for the RMSD Trajectory Tool (or RMSD Visualizer Tool in newer VMD versions) on the menu.


Tristan Croll
Faculty of Health
School of Biomedical Sciences
Institute of Health and Biomedical Engineering
Queensland University of Technology
60 Musk Ave
Kelvin Grove QLD 4059 Australia
+61 7 3138 6443
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> On 5 Dec 2015, at 5:00 AM, Marta Wisniewska <> wrote:
> Hello VMD users,
> I have a two the same structure (sequence) - before and after minimization. is theres any shortcut in vmd program to align these two structures each other?
> Thank you in advance,
> Marta