VMD-L Mailing List

From: Bylund, Tatsiana (NIH/NIAID) [F] (tatsiana.bylund_at_nih.gov)
Date: Tue Mar 01 2016 - 10:35:36 CST

Dear all,

I performed fitting of a protein structure into a density map. I followed mdff tutorial, but in my case I don't have the target structure, just the initial structure and target density map.

Is there a way to analyze the results? Not sure how to compute rmsd since there is no target structure.

Thank you very much!

Best regards,
Tatsiana