VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Apr 19 2004 - 17:08:18 CDT

Hi guys,
  Yeah, most BSD systems I've seen don't have a "values.h" in the
system includes, so you should comment out that #include directive in
the pre-generated AtomParser.C code. I think the contents of values.h
will be found by including math.h and the other mainstream headers if
they aren't already. I don't have a NetBSD test box here, so I don't have
a convenient way to test this for myself presently. It shouldnt' be too
difficult to build VMD from source on a BSD system, as the MacOS version
of VMD is 95% the same as you'd do for a BSD system since MacOS X is
a BSD derivative.

  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Apr 19, 2004 at 10:25:21AM -0700, Brian Bennion wrote:
> yes this is definitely a problem of setup. John and others have addressed
> it I thought. Unfortunately I can't remember the workaround proposed by
> John. I ended up downgrading my version of the bin/yacc parser code. The
> most current version is "broken".
>
> Regards
> Brian
>
>
>
> On Mon, 19 Apr 2004, Lubos Vrbka wrote:
>
> > hi,
> >
> > > 2 things
> > > 1) you can just copy the vmdplugin.h from the plugin tree to vmd src dir
> > > 2) edit the configure script/make file to look for plugin headers.
> >
> > thanks, i changed the plugin directory in the configure... so i
> > proceeded a little bit further (but not much). after config, make depend
> > and make i get:
> >
> > ...
> > echo "Compiling " AtomParser.C " --> " AtomParser.o " ..."; g++
> > -fno-for-scope -Wall -Wno-deprecated -O3 -march=i586
> > -fomit-frame-pointer -DARCH_NETBSD -DVMDSURF -DVMDMSMS -DVMDISOSURFACE
> > -DVMDTCL -DVMDTK -DVMDSTATICPLUGINS -I/usr/pkg/include
> > -I/usr/pkg/include -I../../plugins/include
> > -I../../plugins/NETBSD/molfile -I. -c AtomParser.C -o ../NETBSD/AtomParser.o
> > Compiling AtomParser.C --> AtomParser.o ...
> > AtomParser.y:112:20: values.h: No such file or directory
> > *** Error code 1
> > Stop.
> > make: stopped in /usr/home/vrbka/tmp/vmd/vmd-1.8.2/src
> >
> > and i cannot find the values.h file anywhere... so what is wrong now?
> >
> > thanks for help... i think it's just first setup problem...
> >
> > regards,
> > lubos
> >
> > --
> > Lubos
> > _@_"
> >
>
> *****************************************************************
> **Brian Bennion, Ph.D. **
> **Computational and Systems Biology Division **
> **Biology and Biotechnology Research Program **
> **Lawrence Livermore National Laboratory **
> **P.O. Box 808, L-448 bennion1_at_llnl.gov **
> **7000 East Avenue phone: (925) 422-5722 **
> **Livermore, CA 94550 fax: (925) 424-6605 **
> ***************************************************************** 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349              
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078