From: Ashar Malik (
Date: Wed Jun 28 2017 - 13:37:28 CDT

Windows users do run into this problem (not sure why) probably because of
rights (i think!).

You should make a working directory either on your desktop or in a drive
where you have more control (probably where windows isn't sitting).

The above assumes you are using windows. If this doesn't help write back.

On Thu, Jun 29, 2017 at 5:45 AM, Ghosh, Shreya <> wrote:

> Hi,
> After working with VMD, I have saved the pdb and psf files in a particular
> folder. On typing "ls" in the Tk console, the list of files in that
> folder are displayed. However, when I navigate to the same folder, not
> through the console, I do not see them. I checked if the hidden files
> option is activated, but it is not. All files and folders except the pdb
> and psf files show up. What should I do?
> Thanks,
> Shreya