From: Vermaas, Joshua (
Date: Fri Mar 23 2018 - 12:26:59 CDT

Hi Sandip,

You'll want transvecinv (, and apply it to your molecule.


On 03/23/2018 09:35 AM, Sandip Mondal wrote:
Dear user,

   How to parallelize a line, form between two center of mass of two molecules to an axis (let say Z axis) in vmd?

Thanking you,