VMD-L Mailing List
From: Hazel, Justin (justin.hazel_at_myemail.indwes.edu)
Date: Mon Jul 09 2018 - 12:59:00 CDT
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You can just copy the text from the HTML and paste it into a blank .str file using a text editor. The HTML is formatted correctly for a .str, so as long as your file is named with .str at the end it should be read correctly.
-Justin
________________________________
From: Ushasi Pramanik 1710228 <ushasi17_at_iiserb.ac.in>
Sent: Monday, July 9, 2018 9:59:55 AM
To: Hazel, Justin
Subject: Re: vmd-l: "Prepare Parameterization from CGenFF Program Output" in ffTK
Thanks a lot. I have worked on it and I found what you are talking about. Could you help me on downloading ParamChem generated .str file as there is no option to download the .str file from ParamChem, it is just displaying in HTML format.
Regards,
USHASI
On Mon, Jul 9, 2018 at 6:39 PM, Hazel, Justin <justin.hazel_at_myemail.indwes.edu<mailto:justin.hazel_at_myemail.indwes.edu>> wrote:
Ushasi,
I believe this section was added in VMD 1.9.3, so it will be unavailable to you until you download the this version or later. I have been using the 1.9.4 alpha version with success, so that is also an option.
-Justin
________________________________
From: owner-vmd-l_at_ks.uiuc.edu<mailto:owner-vmd-l_at_ks.uiuc.edu> <owner-vmd-l_at_ks.uiuc.edu<mailto:owner-vmd-l_at_ks.uiuc.edu>> on behalf of Ushasi Pramanik 1710228 <ushasi17_at_iiserb.ac.in<mailto:ushasi17_at_iiserb.ac.in>>
Sent: Monday, July 9, 2018 12:04:00 AM
To: vmd-l_at_ks.uiuc.edu<mailto:vmd-l_at_ks.uiuc.edu>
Subject: vmd-l: "Prepare Parameterization from CGenFF Program Output" in ffTK
Hi,
I am using VMD-1.9.2 version and ffTK plugin there. Can anyone help me by answering where is "Prepare Parameterization from CGenFF Program Output" section of the BuildPar tab in ffTK? I am not able to find it.
Thanks,
Ushasi
-- USHASI PRAMANIK Ph.D. student IISER Bhopal Dept of Chemistry Thesis Supervisor: Dr. Rajesh Kumar Murarka Academic Building 2, Lab No. 202 Roll No. 1710228 Computational Biophysics and Soft Matter Group <https://home.iiserb.ac.in/~rkm/> https://home.iiserb.ac.in/~rkm/ email: ushasi17_at_iiserb.ac.in<mailto:ushasi17_at_iiserb.ac.in> -- USHASI PRAMANIK Ph.D. student IISER Bhopal Dept of Chemistry Thesis Supervisor: Dr. Rajesh Kumar Murarka Academic Building 2, Lab No. 202 Roll No. 1710228 Computational Biophysics and Soft Matter Group <https://home.iiserb.ac.in/~rkm/> https://home.iiserb.ac.in/~rkm/ email: ushasi17_at_iiserb.ac.in<mailto:ushasi17_at_iiserb.ac.in>
- Next message: Ganne, Akshatha: "Fixing Martini PSF"
- Previous message: Mani Kandan: "Gamma Silicon Nitrite Crystal - Reg"
- Maybe in reply to: Hazel, Justin: "Re: "Prepare Parameterization from CGenFF Program Output" in ffTK"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]