VMD-L Mailing List

From: Sasthi Charan Mandal (sasthi.phys_at_gmail.com)
Date: Sun Sep 09 2018 - 02:33:25 CDT

Dear Josh,
      Thank you for the answer. But can you please tell me how do I get the
detailed output?
Sasthi

On Sunday, September 9, 2018, Vermaas, Joshua <Joshua.Vermaas_at_nrel.gov>
wrote:

> The measure h-bonds command? Or ask the plugin for detailed output?
>
> -Josh
>
>
> On 2018-09-08 02:16:24-06:00 owner-vmd-l_at_ks.uiuc.edu wrote:
>
> Dear all,
> I want to calculate the hydrogen bonds between protein and dna
> atomwise in vmd. So I used vmd for this calculation but vmd gives the
> hydrogen bonding in residue wise for an example residue-132-side with
> dna-11-side. But vmd does not give the hydrogen bond between atoms i.e.
> which atom in protein making hydrogen bond with which dna atom. So if you
> give any suggestion of how to calculate hydrogen bonds atomwise, it would
> be very much helpful.Thanks in advance.
>
>