VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Feb 19 2019 - 13:33:12 CST

Hi,
  The "voltool" command is new and only exists in the very latest
test version of VMD (which is posted for download). No VMD releases
prior to the latest VMD 1.9.4 test versions have it.
The VMD 1.9.4a27 test build is currently posted for Linux/Mac, so
I would encourage using that if you want the 'volltoo' commands.

Best,
  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Feb 19, 2019 at 06:35:31PM +0000, Vermaas, Joshua wrote:
> Is it complaining about voltool or volutil? Volutil is a package that
> you'd load with "package require volutil", which in principle should have
> been loaded when you did a "package require mdff". I'm unfamiliar with any
> voltool commands.
>
> -Josh
>
>
>
> On 2019-02-19 11:19:46-07:00 owner-vmd-l_at_ks.uiuc.edu wrote:
>
> Are there any necessary packages required? Have you imported them?
>
> On Wed, Feb 20, 2019, 01:07 Montserrat Fabrega Ferrer
> <[1]mffcri_at_ibmb.csic.es wrote:
>
> Dear all,
> I am new using VMD and MDFF. I am trying to do a flexible fitting of
> an atomic structure into a cryo-EM low resolution volume following the
> tutorial, but I get already stuck running on the VDM console the mdff
> sim to obtain a simulate map out of the pdb.
> I use the following command:
> mdff sim $sel -res 5 -o map.situs
> And I got the following error:
> invalid command name "voltool"
> I would really much appreciate your help·
> Kind regards,
> Montserrat
> --
> Montserrat Fabrega Ferrer, PhD
> Miquel Coll lab - Structural biology of protein-nucleic acid complexes
> and molecular machines
> SBU-CSIC / IRB Barcelona
> c/ Baldiri Reixac, 10
> 08028 Barcelona, Spain
> [2]mffcri_at_ibmb.csic.es / [3]montserrat.fabrega_at_irbbarcelona.org
> Tel: +34 93 40 34957
>
>
> References
>
> Visible links
> 1. mailto:mffcri_at_ibmb.csic.es
> 2. mailto:mffcri_at_ibmb.csic.es
> 3. mailto:montserrat.fabrega_at_irbbarcelona.org 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/