VMD-L Mailing List

From: Angana Ray (angana88ray_at_gmail.com)
Date: Fri Apr 12 2019 - 17:44:45 CDT

Hi

I am currently simulations a complex containing protein, dsDNA and RNA. The
trajectory is generated in Anton2. I would like to visualize and analyze
the the trajectory with VMD.

Due PBC the nucleic acid part appears to be away from the protein in VMD
visualization. I want to unwrap the system such that my complex has the
protein, DNA and RNA together. The pbc unwarp -sel is not working for this.

I am attaching two files here (.dms and .trr). Please let me know how this
can be sorted .

Thank you
 4un3l_init.dms
<https://drive.google.com/file/d/1ky4AoaFNVa7PVbgbtU-1r2ZAb7wLelTd/view?usp=drive_web>
 test.trr
<https://drive.google.com/file/d/1b3Zd3lh-boL5ShzGRoGaF_IIihtXGpbt/view?usp=drive_web>

regards
Angana 

-- 
Angana Ray
Postdoctoral Scholar - Research Associate
University of Southern California
Mobile: +1-2132840728