VMD-L Mailing List

From: Bennion, Brian (bennion1_at_llnl.gov)
Date: Mon Jun 17 2019 - 14:38:04 CDT

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________________________________
From: Parviz Seifpanahi Shabane <sparviz_at_vt.edu>
Sent: Monday, June 17, 2019 12:10:02 PM
To: Bennion, Brian
Subject: Re: vmd-l: How to calculate water density.

I have a script which gives me the number of water molecules around the protein in a certain distance (10A), but I do not how to calculate the volume.
Best

On Mon, Jun 17, 2019 at 1:05 PM Bennion, Brian <bennion1_at_llnl.gov<mailto:bennion1_at_llnl.gov>> wrote:
What have you tried so far? What have searches of this list turned up. Are there any example in the vmd tutorials?

Brian

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On June 17, 2019 at 8:40:15 AM PDT, Parviz Seifpanahi Shabane <sparviz_at_vt.edu<mailto:sparviz_at_vt.edu>> wrote:
Hi All,
I need to calculate densety of water in my systeam with using VMD.
How should I do it?
Best
--
Parviz Seifpanahi
Ph.D. Candidate
Department of Physics
Virginia Tech, Blacksburg, Va 24061
--
Parviz Seifpanahi
Ph.D. Candidate
Department of Physics
Virginia Tech, Blacksburg, Va 24061

• Next message: Bassam Haddad: "Re: Merging two proteins"
• Previous message: Parviz Seifpanahi Shabane: "How to get box information from file.dcd."
• Maybe in reply to: Bennion, Brian: "Re: How to calculate water density."
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]